RRP Use Cases

This page lists several demonstrators and use cases for RRP in different disciplines / applications. For each RRP project, the following information is provided:

a short summary of the project
a link to the Git repository of the project
a link to the project’s executable Player bundle on Zenodo

RRP LaTeX

Summary

This RRP project repository demonstrates how to work with LaTeX in combination with Overleaf for efficent and collaborative work on manuscripts.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-latex

Player Bundle

https://zenodo.org/uploads/17311271

RRP Minimal Template

Summary

This RRP repository provides a minimal template (cookiecutter) for setting up an RRP project.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-min

Player Bundle

https://zenodo.org/uploads/17376398

RRP PCB

Summary

This RRP project repository demonstrates how printed circuit boards (PCB) can be engineered.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-pcb

Player Bundle

https://zenodo.org/uploads/17376573

RRP CAD

Summary

This RRP project repository demonstrates how to perform engineering work to create CAD files for e.g. additive or CNC manufacturing and rapid prototyping.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-cad

Player Bundle

https://zenodo.org/uploads/17376745

RRP Desktop

Summary

This RRP project repository demonstrates an alternative integrated development environment. It provides XFCE (or other desktop environments) for worfklows that depend on tools with graphical user interfaces.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-desktop

Player Bundle

https://zenodo.org/uploads/17378403

RRP AI & LLM

Summary

This RRP project repository demonstrates how to train a deep learning model for cell segmentation of microscopy data mounted from the research data management system (RDMS) openBIS ELN-LIMS. Microscopy data is managed in the RDMS and annotated with respective metadata. Using their permID the data is directly available in the RRP project for analysis and can be integrated in reproducible workflows.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-dl

Player Bundle

https://zenodo.org/uploads/17407978

RRP Genetic Engineering

Summary

This RRP project repository demonstrates alternative, reproducible approaches to genetic engineering including molecular cloning and DNA editing. It provides reproducible workflows in contrast to desktop or cloud-based graphical user interfaces such as ApE, SnapGene, Genious or Benchling.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-genetic-engineering

Player Bundle

https://zenodo.org/uploads/17394691

RRP Microscopy & FACS

Summary

This RRP project repository demonstrates how to work with microscopy or FACS data mounted from the research data management system (RDMS) openBIS ELN-LIMS. Microscopy and FACS data is managed in the RDMS and annotated with respective metadata. Using their permID the data is directly available in the RRP project for Visualization or analysis and can be integrated in reproducible workflows.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-mic-facs

Player Bundle

https://zenodo.org/uploads/17394998

RRP RStudio

Summary

This RRP project repository demonstrates how to work with R-Studio and R Markdown on RRP for keeping lab records in a computational notebook and analyse data stored in a research data management system (RDMS) to finally generate reports.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-rstudio

Player Bundle

https://zenodo.org/uploads/17395599

RRP TracX

Summary

This RRP project repository demonstrates how to use TracX, a cell tracking library with MATLAB on RRP.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-tracx

Player Bundle

https://zenodo.org/uploads/17432841

RRP VSCode

Summary

This RRP project repository demonstrates the use of Visual Studio, a real editor (Integrated development environment, IDE) and alternative to JupyterLab.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-vscode

Player Bundle

https://zenodo.org/uploads/17404794

RRP Multi-Language

Summary

This RRP project contains many different language kernels for e.g., Python, R, C++, Java, Julia, Go that can be in projects e.g. with computational notebooks. Furthermore, this RRP projects includes useful JupyterLab environment extensions customizing the user experience. For example, presentation mode, MyST Markdown as alternative to R Markdown/LaTeX for generating reports and articles or a tool for creating vector drawings.

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-multilang

Player Bundle

https://zenodo.org/uploads/17413300

RRP Study 1

Summary

This RRP project repository demonstrates how published data with R-Studio and R Markdown on RRP can be reproduced (data taken from Clarkson et al. 2015).

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-study1

Player Bundle

https://zenodo.org/uploads/17396968

RRP Study 2

Summary

This RRP project repository demonstrates how published data from an independent study can be reproduced with RRP (data taken from Beam et al. 2021).

Git repository

https://git.bsse.ethz.ch/rrp-examples/rrp-study2

Player Bundle

https://zenodo.org/uploads/17396968